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In a statement on Thursday, he said he was 'shocked and distressed' to hear of the terrorist attack.
"I condemn the perpetrators of this attack in the strongest of terms."
This is the second terrorist attack in a week in Bangladesh.
Two police constables were killed when a police detachment guarding the Sholakia ground at Kishoreganj came under a bomb attack, just before prayers began at the country’s largest Eid congregation.
The Indian President said the Bangladeshi people and government were engaged "in a brave struggle against the evil forces of extremism and violence”.
Earlier, on July 1, gunmen stormed a cafe in Dhaka’s diplomatic zone, killing 17 foreigners.