The JaSaD leader and freedom fighter died at 78 on Friday
Morshed, a student of BUET's 17th batch, turned himself in to Dhaka's Chief Metropolitan Magistrate's Court and sought bail in the case on Sunday.
But Metropolitan Magistrate Begum Yasmin Ara rejected the plea and ordered him to jail.
Lawyer Imrul Hasan represented Morshed in court. The remaining three absconding accused are Mahmudul Jishan, Ehteshamul Rabbi Tanim and Mujtaba Rafi.
His father started a case against 19 students with the police the next day. Police subsequently arrested 21 people over the matter. A total of 25 people were charged in the case.